Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12123948 chr1:247207155 C/T 0 176 25.67 23.83 2.93 KM Plot
PCPG rs1212871 chr13:37647838 C/T 0.000355 176 4.17 19.1 25.97 KM Plot
PCPG rs12138137 chr1:56325176 C/T 2.41E-7 171 25.87 20.02 15.6 KM Plot
PCPG rs12138203 chr1:240454034 C/T 0.000281 175 23.43 27.47 22.32 KM Plot
PCPG rs12139893 chr1:247208406 G/A 0 176 25.67 23.83 2.93 KM Plot
PCPG rs12155466 chr7:36157419 C/G 0.000452 177 25.87 24.5 14.37 KM Plot
PCPG rs12155475 chr7:36157490 G/A 0.000452 177 25.87 24.5 14.37 KM Plot
PCPG rs12166741 chr22:27393381 C/T 0.000125 178 25.47 25.77 17.8 KM Plot
PCPG rs12174402 chr6:20415005 A/G 5.51E-6 178 25.17 30.73 23.43 KM Plot
PCPG rs12220898 chr10:50576633 C/T 3.87E-6 178 24.53 33.13 25.17 KM Plot
PCPG rs12227928 chr12:53505113 G/A 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs12230528 chr12:53505127 A/G 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs12232124 chr14:74597139 C/T 4.4E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs12232131 chr14:74550381 A/T 0.000185 178 25.4 27.2 10.43 KM Plot
PCPG rs12232167 chr14:74552589 A/G 2.24E-5 176 25.4 27.43 10.3 KM Plot